PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001705.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 304aa    MW: 33696.9 Da    PI: 8.3953
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001705.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55e-1935126289
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                              fY++YA +vGF+ r+sk++k  r++ ++ ++ vCs+eg++++++++     ++  +r+r+++r+ Ckak++ k+  +g ++v+ le
  Itr_sc001705.1_g00006.1  35 FYKQYAGSVGFDCRQSKTQKG-RDDVVVLKHVVCSREGFKQSSSSTssstqSTAVKRRRVTNRVWCKAKVVFKLIPNGCYVVQFLE 119
                              9***************99998.67779999************99998888777778899*************************** PP

                     FAR1  83 leHnHel 89 
                              + H+H++
  Itr_sc001705.1_g00006.1 120 ERHTHSM 126
                              *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1635126IPR004330FAR1 DNA binding domain
PfamPF105512.2E-11186243IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNLDSTSGGC DEVCADRLKP HMGQQFDFLD GAFGFYKQYA GSVGFDCRQS KTQKGRDDVV  60
VLKHVVCSRE GFKQSSSSTS SSTQSTAVKR RRVTNRVWCK AKVVFKLIPN GCYVVQFLEE  120
RHTHSMLFKE IVGEYSNVGA TNTLFKRREL CESFGLEYDV DEGDQLSRVF FTDAVSKKNF  180
SLFGDVVSFD ATYHTNRYHL VFVPFTGIDN HKTCVTFGVG LLTRDGIDSY VWLVGRALSH  240
LPNAIPNHVA VRSYATVTPL RQSLTHLPSA TGPPPTDPPP PTASTQQRRH PPDSAESPTA  300
GNTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892KRRRV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-18far-red elongated hypocotyls 3